We provide a number of other servers that don't fit into the antibodies or mutations categories. A number of these methods and resources are used by the SAAPdap/SAAPpred mutation analysis software and some may be downloaded from our software pages.
Mappings and Databases
- PDBSWS
- PDBSWS provides a mapping between PDB codes and UniProtKB/SwissProt entries at chain and residue levels.
- PDBSprotEC
- PDBSprotEC provides a mapping between PDB codes and EC numbers for enzymes.
- ZincBind
- ZincBind is a database of zinc binding sites in PDB files.
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Access our Software
- HBonds
- The HBonds server analyzes whether a mutation will allow a hydrogen bond to be maintained.
- ProFit
- ProFit is our widely-used software for fitting protein structures. The server provides a simple (but rather limited) interface to this powerful program.
- Topscan
- TopScan is a topology comparison program allowing you to seaerch your structure against a database of structures to look for structural similarity.
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Orthologues and Conservation
- Fosta
- Fosta is a database of functionally equivalent orthologues identified by mining UniProtKB/SwissProt annotations.
- Impact
- Impact assesses sequence conservation in a multiple alignment and provides a threshold to define significantly conserved residues for a particular set of proteins.
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Easier access to external data
- OMIM
- OMIM provides a simple searchable interface to mutations in OMIM (Online Mendelian Inheritance in Man), mapping these to UniProtKB/SwissProt entries and correcting the numbering.
- Pubmed
- PubMed provides a simplt searchable interface to the NCBI PubMed database returning the results in BibTeX format.
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