We have developed a large amount of software that we make freely available.

Mostly these are Bioinformatics programs, but we also provide some general utilities and odds and ends.

We also have more software on our github pages.

AndrewCRMartin ACRMGroup

ProFit

Protein least-squares fitting

BiopTools

A set of command-line tools for handling (primarily) protein structure

NW

A pairwise Needleman and Wunsch sequence alignment program

AVP

Calculates protein void volumes and packing quality

QTree

Space filling pictures using the quad-tree algorithm

MINT

A graphical interface to Andrej Sali's Modeller program

Torsions

Calculates backbone torsion angles from a PDB file

SAPTF

'Sequence Analysis Plugin Tool Framework'

Prodoric

A command-line wrapper to the PRODORIC web site

APAT

'Automated Protein Annotation Tool'

BiopLib

A library of C routines for general programming and handling protein structure

Atomium

A Python library for reading and handling protein protein structure

JSAV

JavaScript sequence alignment viewer

buttons.js

Handle buttons on a navigation bar (just click to download)

lastmodified.js

Print 'last modified' text (just click to download)

QLite

A batch queueing system for small farms of machines

Cluster

A program to perform hierarchical cluster analysis on a set of arbitrary vectors

CDoc

A program to generate HTML documentation from C source files

Mirror

A patch for the popular 'mirror' program

Wdiff

A patch for the GNU 'wdiff' program (V0.5) to fix a bug under Linux

AndrewCRMartin

Code written (almost) exclusively by Andrew Martin

Group Members

You can also visit GitHub pages of Group Members.

ACRMGroup

Code written by the group

GitHub

Most of our antibody software is on the GitHub pages listed above.

abYdraw

abYdraw is a drawing program for antibody cartoons supporting our AbML markup language.

Online only

Other software is only accessible online.