BIOC0006 - Software installation

If you are working remotely, you need to install two pieces of software (PyMol and KineMage) or use the Desktop@UCL Anywhere. You will also need to download the data files.

Data files (all operating systems)

KineMAGE datafile

c1Basics.kin

PyMol datafile

pdb1dvj.ent

 

Using the Desktop@UCL

If you cannot, or do not wish to, install the software onto your computer (perhaps because you are using Windows 10S/11S and do not wish to switch off secure mode, or you are using a Mac and cannot install KineMage), it is available on the UCL Desktop - simply type 'pymol' or 'kinemage' into the search box. If you are working remotely, you can access this via the Desktop@UCL Anywhere, but it may be slow, particularly if you are using the HTML5 'Lite' version.

The UCL Desktop has several versions of PyMol installed. You should be able to use any of them except for 'PyMol Full Screen' or 'PyMol Viewer Only'.

Software for Windows

Software for MacOS (OS/X)

KineMAGE

I have investigated installation of KineMage for the Mac, but no easily installable version is currently available. Its replacement (KiNG) does not support what we need to do in this practical.
You must use the UCL desktop instead.

 

Software for Linux

KineMAGE

Mage Executable

You will also need to install Motif:

sudo dnf install motif
     --or--
sudo apt-get install libmotif-common

depending on your Linux distribution

PyMol

PyMol Website

You may also be able to install PyMol from your package manager.