Bioplib: Globals

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Bioplib

Protein Structure C Library

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f
m
p

All Data Structures Files Functions Variables Typedefs Macros Pages

- b -

blAddCBtoAllGly() : GlyCB.c , pdb.h
blAddCBtoGly() : pdb.h , GlyCB.c
blAddConect() : BuildConect.c , pdb.h
blAddNTerHs() : pdb.h , AddNTerHs.c
blAddOneDirectionConect() : BuildConect.c , pdb.h
blAffinealign() : align.c , seq.h
blAffinealignuc() : align.c , seq.h
blAlign() : seq.h , align.c
blAllocPDBStructure() : pdb.h , StructurePDB.c
blAMCBText() : plotting.c , plotting.h
blAMCTText() : plotting.c , plotting.h
blAMDraw() : plotting.c , plotting.h
blAMEndLine() : plotting.c , plotting.h
blAMEndPlot() : plotting.c , plotting.h
blAMInitPlot() : plotting.c , plotting.h
blAMLCText() : plotting.h , plotting.c
blAMMove() : plotting.c , plotting.h
blAMRText() : plotting.c , plotting.h
blAMSetFont() : plotting.c , plotting.h
blAMSetLineStyle() : plotting.c , plotting.h
blAMSetPen() : plotting.c , plotting.h
blAMText() : plotting.c , plotting.h
blAngle() : angle.c , angle.h
blAppendPDB() : AppendPDB.c , pdb.h
blApplyMatrixPDB() : ApMatPDB.c , pdb.h
blAreResiduePointersBonded() : BuildConect.c , pdb.h
blAreResiduesBonded() : BuildConect.c , pdb.h
blArray2D() : array.h , array2.c
blArray3D() : array.h , array3.c
blAtomNameMatch() : AtomNameMatch.c , pdb.h
blAtomNameRawMatch() : AtomNameMatch.c , pdb.h
blBuildAAList() : aalist.h , aalist.c
blBuildAtomNeighbourPDBListAsCopy() : BuildAtomNeighbourPDBList.c , pdb.h
blBuildConectData() : BuildConect.c , pdb.h
blBuildFlagSeqFromAAList() : aalist.c , aalist.h
blBuildResSpec() : ParseRes.c , pdb.h
blBuildSeqFromAAList() : aalist.c , aalist.h
blCalcAccess() : access.c , access.h
blCalcCellTrans() : CalcCellTrans.c , pdb.h
blCalcChi() : CalcChiPDB.c , pdb.h
blCalcCterCoords() : CalcCterCoords.c , pdb.h
blCalcExtSD() : CalcExtSD.c , MathUtil.h
blCalcMDMScore() : align.c , seq.h
blCalcMDMScoreUC() : align.c , seq.h
blCalcResAccess() : access.c , access.h
blCalcRMSPDB() : CalcRMSPDB.c , pdb.h
blCalcSD() : CalcSD.c , MathUtil.h
blCalcSecStrucPDB() : secstr.c , secstr.h
blCalcTetraHCoords() : CalcTetraHCoords.c , pdb.h
blCalculateBestFitLine() : regression.c , regression.h
blCalculateCovarianceMatrix() : regression.c , regression.h
blCheckExtn() : CheckExtn.c , general.h
blCheckFileFormatPDBML() : pdb.h , ReadPDB.c
blCheckProgName() : filename.c , general.h
blChindex() : chindex.c , general.h
blCloseOrPipe() : general.h , openorpipe.c
blCollapseSpaces() : general.h , stringutil.c
blCopyConects() : BuildConect.c , pdb.h
blCopyPDB() : CopyPDB.c , pdb.h
blCopyPDBCoords() : CopyPDBCoords.c , pdb.h
blCountchar() : countchar.c , general.h
blCreateRotMat() : CreateRotMat.c , matrix.h
blCrossProd3() : CrossProd3.c , MathUtil.h
blDeleteAConect() : BuildConect.c
blDeleteAConectByNum() : BuildConect.c , pdb.h
blDeleteAtomConects() : BuildConect.c , pdb.h
blDeleteAtomPDB() : KillPDB.c , pdb.h
blDeleteAtomRangePDB() : KillPDB.c , pdb.h
blDeleteConect() : pdb.h
blDeleteHashKey() : hash.c , hash.h
blDeleteResiduePDB() : KillPDB.c , pdb.h
blDistPtLine() : DistPtLine.c , MathUtil.h
blDNAtoAA() : DNAtoAA.c , seq.h
blDoHelp() : help.c , help.h
blDoParseResSpec() : ParseRes.c , pdb.h
blDoPDB2Seq() : PDB2Seq.c , seq.h
blDoPDB2SeqByChain() : PDB2Seq.c , seq.h
blDoReadPDB() : pdb.h , ReadPDB.c
blDoReadPDBML() : pdb.h , ReadPDB.c
blDumpHash() : hash.c , hash.h
blDupePDB() : DupePDB.c , pdb.h
blDupeResiduePDB() : DupeResiduePDB.c , pdb.h
blEigen() : eigen.c , eigen.h
blEndRepSChain() : pdb.h , rsc.c
blExtractNotZonePDBAsCopy() : ExtractZonePDB.c , pdb.h
blExtractNotZoneSpecPDBAsCopy() : ExtractZonePDB.c , pdb.h
blExtractZonePDBAsCopy() : ExtractZonePDB.c , pdb.h
blExtractZoneSpecPDBAsCopy() : ExtractZonePDB.c , pdb.h
blFactdiv() : factdiv.c , MathUtil.h
blFactorial() : factorial.c , MathUtil.h
blFgetsany() : fgetsany.c , general.h
blFindAAListItemByResnum() : aalist.c , aalist.h
blFindAAListOffsetByResnum() : aalist.c , aalist.h
blFindAtomInRes() : FindAtomInRes.c , pdb.h
blFindAtomWildcardInRes() : FindAtomWildcardInRes.c , pdb.h
blFindCentroid() : regression.c , regression.h
blFindEndPDB() : pdb.h
blFindHetatmResidue() : FindHetatmResidue.c , pdb.h
blFindHetatmResidueSpec() : FindHetatmResidueSpec.c , pdb.h
blFindMolID() : pdb.h , PDBHeaderInfo.c
blFindNextChain() : pdb.h , StructurePDB.c
blFindNextChainPDB() : FindNextChainPDB.c , pdb.h
blFindNextPrime() : MathUtil.h , prime.c
blFindNextResidue() : FindNextResidue.c , pdb.h
blFindOriginalResType() : pdb.h , PDBHeaderInfo.c
blFindRawAtomInRes() : FindRawAtomInRes.c
blFindResidue() : FindResidue.c , pdb.h
blFindResidueSpec() : FindResidueSpec.c , pdb.h
blFindZonePDB() : FindZonePDB.c , pdb.h
blFitCaCbPDB() : FitCaCbPDB.c , pdb.h
blFitCaPDB() : FitCaPDB.c , pdb.h
blFitNCaCPDB() : FitNCaCPDB.c , pdb.h
blFitPDB() : FitPDB.c , pdb.h
blFixAtomName() : pdb.h , ReadPDB.c
blFixCterPDB() : FixCterPDB.c , pdb.h
blFixOrderPDB() : OrderPDB.c , pdb.h
blFNam2PDB() : FNam2PDB.c , pdb.h
blFormatCheckWritePDB() : pdb.h , WritePDB.c
blFreeArray2D() : array.h , array2.c
blFreeArray3D() : array.h , array3.c
blFreeBiomolecule() : pdb.h , PDBHeaderInfo.c
blFreeHash() : hash.c , hash.h
blFreeHashKeyList() : hash.c , hash.h
blFreePDBStructure() : pdb.h , StructurePDB.c
blFreeStringList() : FreeStringList.c , general.h
blFreeWholePDB() : pdb.h , ReadPDB.c
blFtostr() : ftostr.c , general.h
blGetAAListLen() : aalist.c , aalist.h
blGetAtomTypes() : OrderPDB.c , pdb.h
blGetBiomoleculeWholePDB() : PDBHeaderInfo.c , pdb.h
blGetCofGPDB() : GetCGPDB.c , pdb.h
blGetCofGPDBRange() : GetCofGPDBRange.c , pdb.h
blGetCofGPDBSCRange() : GetCofGPDBSCRange.c , pdb.h
blGetCompoundWholePDBChain() : pdb.h , PDBHeaderInfo.c
blGetCompoundWholePDBMolID() : pdb.h , PDBHeaderInfo.c
blGetCrystPDB() : GetCrystPDB.c , pdb.h
blGetCrystWholePDB() : GetCrystPDB.c , pdb.h
blGetExptlOld() : pdb.h , ResolPDB.c
blGetExptlPDB() : pdb.h , ResolPDB.c
blGetExptlWholePDB() : pdb.h , ResolPDB.c
blGetfield() : general.h , getfield.c
blGetFilestem() : general.h , GetFilestem.c
blGetHashKeyList() : hash.c , hash.h
blGetHashValue() : hash.c , hash.h
blGetHashValueChar() : hash.c , hash.h
blGetHashValueDouble() : hash.c , hash.h
blGetHashValueInt() : hash.c , hash.h
blGetHashValuePointer() : hash.c , hash.h
blGetHashValueString() : hash.c , hash.h
blGetHeaderWholePDB() : pdb.h , PDBHeaderInfo.c
blGetKybdString() : WindIO.c , WindIO.h
blGetModresWholePDB() : pdb.h , PDBHeaderInfo.c
blGetParam() : parse.c , parse.h
blGetPDBByN() : GetPDBByN.c , pdb.h
blGetPDBChainAsCopy() : GetPDBChainAsCopy.c , pdb.h
blGetPDBChainLabels() : GetPDBChainLabels.c , pdb.h
blGetPDBCoor() : GetPDBCoor.c , pdb.h
blGetResolPDB() : pdb.h , ResolPDB.c
blGetResolWholePDB() : pdb.h , ResolPDB.c
blGetSeqresAsStringWholePDB() : pdb.h , PDBHeaderInfo.c
blGetSeqresByChainWholePDB() : pdb.h , PDBHeaderInfo.c
blGetSpeciesWholePDBChain() : pdb.h , PDBHeaderInfo.c
blGetSpeciesWholePDBMolID() : pdb.h , PDBHeaderInfo.c
blGetString() : parse.c , parse.h
blGetTitleWholePDB() : pdb.h , PDBHeaderInfo.c
blGetWord() : general.h , GetWord.c
blGetWordNC() : general.h , GetWord.c
blHAddPDB() : HAddPDB.c , pdb.h
blHashKeyDefined() : hash.c , hash.h
blHelp() : help.c , help.h
blHPGLCBText() : hpgl.c , hpgl.h
blHPGLCTText() : hpgl.c , hpgl.h
blHPGLDraw() : hpgl.c , hpgl.h
blHPGLEnd() : hpgl.c , hpgl.h
blHPGLFont() : hpgl.c , hpgl.h
blHPGLInit() : hpgl.c , hpgl.h
blHPGLLCText() : hpgl.c , hpgl.h
blHPGLLText() : hpgl.c , hpgl.h
blHPGLMove() : hpgl.c , hpgl.h
blHPGLPen() : hpgl.c , hpgl.h
blHPGLROffText() : hpgl.c , hpgl.h
blHPGLSetDash() : hpgl.c , hpgl.h
blHPGLShowText() : hpgl.c , hpgl.h
blHPGLVText() : hpgl.c , hpgl.h
blIndexAtomNumbersPDB() : IndexPDB.c , pdb.h
blIndexPDB() : IndexPDB.c , pdb.h
blIndexReal() : general.h , IndxReal.c
blInitializeHash() : hash.c , hash.h
blInPDBZone() : InPDBZone.c , pdb.h
blInPDBZoneSpec() : InPDBZoneSpec.c , pdb.h
blInsertNextResidueInAAList() : aalist.c , aalist.h
blInsertNextResiduesInAAList() : aalist.c , aalist.h
blInsertResidueInAAListAt() : aalist.c , aalist.h
blInsertResiduesInAAListAt() : aalist.c , aalist.h
blInStringList() : general.h , InStringList.c
blInvert33() : invert33.c , matrix.h
blIsBonded() : BuildConect.c , pdb.h
blIsConected() : BuildConect.c , pdb.h
blIsHBonded() : hbond.c , hbond.h
blIsMCAcceptorHBonded() : hbond.c , hbond.h
blIsMCDonorHBonded() : hbond.c , hbond.h
blIsPrime() : MathUtil.h , prime.c
blKillLeadSpaces() : general.h , KillLeadSpaces.c
blKillLine() : general.h , KillLine.c
blKillPDB() : KillPDB.c , pdb.h
blKillSidechain() : KillSidechain.c , pdb.h
blKnownSeqLen() : KnownSeqLen.c , seq.h
blLegalAtomSpec() : LegalAtomSpec.c , pdb.h
blListAllHBonds() : hbond.c , hbond.h
blMatch() : parse.c , parse.h
blMatfit() : fit.c , fit.h
blMatMult33_33() : MatMult33_33.c , matrix.h
blMatMult3_33() : MatMult3_33.c , matrix.h
blMovePDB() : MovePDB.c , pdb.h
blMparse() : parse.c , parse.h
blNComb() : MathUtil.h , NComb.c
blNormaliseCSSR() : cssr.h , ReadCSSR.c
blNormalisePDB() : cssr.h , ReadCSSR.c
blNPerm() : MathUtil.h , NPerm.c
blNumericAffineAlign() : NumericAlign.c , seq.h
blNumericCalcMDMScore() : NumericAlign.c , seq.h
blNumericReadMDM() : NumericAlign.c , seq.h
blOnethr() : seq.h , throne.c
blOpenBufferedFile() : BuffInp.c , BuffInp.h
blOpenFile() : general.h , OpenFile.c
blOpenOrPipe() : general.h , openorpipe.c
blOpenPGPFile() : HAddPDB.c , pdb.h
blOpenStdFiles() : general.h , OpenStdFiles.c
blOriginPDB() : OriginPDB.c , pdb.h
blOrtho() : cssr.h , ReadCSSR.c
blPadchar() : general.h , padchar.c
blPadterm() : general.h , padterm.c
blPagingOff() : WindIO.c , WindIO.h
blPagingOn() : WindIO.c , WindIO.h
blParse() : parse.c , parse.h
blParseResSpec() : ParseRes.c , pdb.h
blPearson() : MathUtil.h , pearson.c
blPearson1() : MathUtil.h , pearson1.c
blPhi() : angle.h , phi.c
blPointLineDistance() : MathUtil.h , pldist.c
blPrintResSpecHelp() : ParseRes.c , pdb.h
blProbeBufferedFile() : BuffInp.c , BuffInp.h
blPrompt() : WindIO.c , WindIO.h
blPS2HPGLFont() : plotting.c , plotting.h
blPSCBText() : ps.c , ps.h
blPSClearDash() : ps.h , ps.c
blPSCorrectCase() : ps.c , ps.h
blPSCTText() : ps.h , ps.c
blPSDraw() : ps.c , ps.h
blPSEnd() : ps.c , ps.h
blPSFont() : ps.h , ps.c
blPSInit() : ps.c , ps.h
blPSLCText() : ps.c , ps.h
blPSLText() : ps.c , ps.h
blPSMove() : ps.c , ps.h
blPSROffText() : ps.c , ps.h
blPSSetDash() : ps.c , ps.h
blPSShowText() : ps.h , ps.c
blPSStroke() : ps.c , ps.h
blPSThick() : ps.h , ps.c
blPSVText() : ps.h , ps.c
blQueryStrStr() : QueryStrStr.c , general.h
blReadBufferedFile() : BuffInp.c , BuffInp.h
blReadCSSR() : ReadCSSR.c , cssr.h
blReadCSSRasPDB() : cssr.h , ReadCSSR.c
blReadDisulphidesPDB() : RdSSPDB.c , pdb.h
blReadDisulphidesWholePDB() : pdb.h , RdSSPDB.c
blReadMDM() : seq.h , align.c
blReadPDB() : pdb.h , ReadPDB.c
blReadPDBAll() : ReadPDB.c , pdb.h
blReadPDBAtoms() : ReadPDB.c , pdb.h
blReadPDBAtomsOccRank() : ReadPDB.c , pdb.h
blReadPDBOccRank() : pdb.h , ReadPDB.c
blReadPGP() : pdb.h , HAddPDB.c
blReadPIR() : ReadPIR.c , seq.h
blReadRawPIR() : seq.h , ReadRawPIR.c
blReadSecPDB() : pdb.h , RdSecPDB.c
blReadSecWholePDB() : RdSecPDB.c , pdb.h
blReadSeqresPDB() : RdSeqPDB.c , pdb.h
blReadSeqresWholePDB() : RdSeqPDB.c , pdb.h
blReadSimplePIR() : ReadSimplePIR.c , seq.h
blReadWholePDB() : ReadPDB.c , pdb.h
blReadWholePDBAtoms() : pdb.h , ReadPDB.c
blRemoveAlternates() : ReadPDB.c , pdb.h
blRenumAtomsPDB() : pdb.h , RenumAtomsPDB.c
blRepOneSChain() : rsc.c , pdb.h
blRepOneSChainForce() : rsc.c , pdb.h
blReportStructureType() : ResolPDB.c , pdb.h
blRePrompt() : WindIO.c , WindIO.h
blRepSChain() : rsc.c , pdb.h
blRightJustify() : general.h , justify.c
blRotatePDB() : RotPDB.c , pdb.h
blSafefree() : safemem.c , safemem.h
blSafeleaks() : safemem.h , safemem.c
blSafemalloc() : safemem.h , safemem.c
blScreen() : WindIO.h , WindIO.c
blSelectAtomsPDBAsCopy() : pdb.h , SelAtPDB.c
blSelectCaPDB() : SelectCaPDB.c , pdb.h
blSetAAListFlagByResnum() : aalist.c , aalist.h
blSetAtomRadii() : access.h , access.c
blSetChi() : SetChi.c , pdb.h
blSetElementSymbolFromAtomName() : WritePDB.c , pdb.h
blSetExtn() : SetExtn.c , general.h
blSetHashValue() : hash.h , hash.c
blSetHashValueChar() : hash.h , hash.c
blSetHashValueDouble() : hash.h , hash.c
blSetHashValueInt() : hash.h , hash.c
blSetHashValuePointer() : hash.h , hash.c
blSetHashValueString() : hash.h , hash.c
blSetMaxProteinHBondDADistance() : hbond.h , hbond.c
blSetMDMScoreWeight() : seq.h , align.c
blSetPDBAtomTypes() : pdb.h , atomtype.c
blSetResnam() : pdb.h , SetResnam.c
blShowErrors() : ErrStack.h , ErrStack.c
blShuffleBB() : OrderPDB.c , pdb.h
blShuffleResPDB() : pdb.h , OrderPDB.c
blSimpleangle() : simpleangle.c , angle.h
blSimplifyText() : plotting.h , plotting.c
blSplitSeq() : SplitSeq.c , seq.h
blSplitStringOnChars() : GetWord.c , general.h
blSplitStringOnCommas() : general.h , GetWord.c
blStoreError() : ErrStack.h , ErrStack.c
blStoreString() : general.h , StoreString.c
blStrcatalloc() : strcatalloc.c , general.h
blStrdup() : hash.h , stringutil.c
blStringToLower() : StringToLower.c , general.h
blStringToUpper() : StringToUpper.c , general.h
blStripGlyCB() : GlyCB.c , pdb.h
blStripHPDBAsCopy() : pdb.h , StripHPDB.c
blStripWatersPDBAsCopy() : pdb.h , StripWatersPDB.c
blStrncat() : stringcat.c , general.h
blTermPDB() : TermPDB.c , pdb.h
blThrone() : seq.h , throne.c
blThronex() : seq.h , throne.c
blTorToCoor() : angle.h , TorCoor.c
blTranslatePDB() : pdb.h , TranslatePDB.c
blTrueAngle() : TrueAngle.c , angle.h
blTrueSeqLen() : TrueSeqLen.c , seq.h
blUpstrcmp() : general.h , upstrcmp.c
blUpstrncmp() : upstrncmp.c , general.h
blValidHBond() : hbond.h , hbond.c
blVecAdd3() : MathUtil.h , VecAdd3.c
blVecDist() : matrix.h , VecDist.c
blVecLen3() : MathUtil.h , VecLen3.c
blVecSub3() : VecSub3.c , MathUtil.h
blWindowInteractive() : WindIO.c , WindIO.h
blWindowMode() : WindIO.h , WindIO.c
blWord() : general.h , Word.c
blWordN() : general.h , WordN.c
blWrapPrint() : general.h , wrapprint.c
blWrapString() : general.h , wrapprint.c
blWriteCrystPDB() : pdb.h , WriteCrystPDB.c
blWriteCSSR() : cssr.h , WrtCSSR.c
blWriteGromosPDB() : pdb.h , WritePDB.c
blWriteGromosPDBRecord() : pdb.h , WritePDB.c
blWriteOneStringPIR() : seq.h , WritePIR.c
blWritePDB() : WritePDB.c , pdb.h
blWritePDBAsPDBML() : WritePDB.c , pdb.h
blWritePDBAsPDBorGromos() : WritePDB.c , pdb.h
blWritePDBRecord() : pdb.h , WritePDB.c
blWritePDBRecordAtnam() : WritePDB.c , pdb.h
blWriteTerCard() : WritePDB.c , pdb.h
blWriteWholePDB() : WritePDB.c , pdb.h
blWriteWholePDBHeader() : pdb.h , WritePDB.c
blWriteWholePDBHeaderNoRes() : pdb.h , WritePDB.c
blWriteWholePDBNoConect() : pdb.h
blWriteWholePDBTrailer() : WritePDB.c , pdb.h
blYorN() : WindIO.h , WindIO.c
blZeroMDM() : seq.h , align.c