throne.c File Reference

Convert between 1 and 3 letter aa codes. More...

#include <string.h>
#include "SysDefs.h"

Go to the source code of this file.

Macros
#define	NUMAAKNOWN   39

Functions
char	blThrone (char *three)
char	blThronex (char *three)
char *	blOnethr (char one)

Variables
BOOL	gBioplibSeqNucleicAcid = FALSE

Detailed Description

Convert between 1 and 3 letter aa codes.

Version

V1.9

Date

07.07.14

Copyright

(c) UCL / Dr. Andrew C. R. Martin 1993-2014

Author

Dr. Andrew C. R. Martin

Institute of Structural & Molecular Biology, University College London, Gower Street, London. WC1E 6BT.

andre.nosp@m.w@bi.nosp@m.oinf..nosp@m.org..nosp@m.uk andre.nosp@m.w.ma.nosp@m.rtin@.nosp@m.ucl..nosp@m.ac.uk

This code is NOT IN THE PUBLIC DOMAIN, but it may be copied according to the conditions laid out in the accompanying file COPYING.DOC.

The code may be modified as required, but any modifications must be documented so that the person responsible can be identified.

The code may not be sold commercially or included as part of a commercial product except as described in the file COPYING.DOC.

Description:

Usage:

Revision History:

• V1.0 29.09.92 Original By: ACRM
• V1.1 11.03.94 Added PCA, ASX and GLX to translation table. PCA translates to E Added routines to handle asx/glx
• V1.2 25.07.95 handles nucleic acids Sets the gBioplibSeqNucleicAcid flag if it's a nucleic acid.
• V1.3 08.03.07 Added PGA (Pyroglutamate) to translation table (same as PCA: pyrrolidone carboxylic acid). Note that it isn't clear whether this should translate to Glu or Gln
• V1.4 21.07.08 Added CGN (5-OXO-PYRROLIDINE-2-CARBALDEHYDE) which is again the same as PCA
• V1.5 19.12.08 Corrected NUMAAKNOWN - wasn't looking at U or X as these were > NUMAAKNOWN!
• V1.6 04.02.09 onethr() was not properly working from end of list for nucleic acids
• V1.7 18.02.09 Fixed for new PDB files which have " DT" etc for DNA sequences
• V1.8 30.01.14 Added pyrrolysine and selenocysteine to translation table. By: CTP PYL translates to O, SEC translates to U.
• V1.9 07.07.14 Use bl prefix for functions By: CTP

Definition in file throne.c.

Macro Definition Documentation

#define NUMAAKNOWN   39

Definition at line 98 of file throne.c.

Function Documentation

char* blOnethr

(

char

one

)

Parameters

[in]

one

One letter code

Returns

Three letter code (padded to 4 chars with a space)

Converts 1-letter code to 3-letter code (actually as 4 chars).

• 07.06.93 Original By: ACRM
• 25.07.95 If the gBioplibSeqNucleicAcid flag is set, assumes nucleic acids rather than amino acids
• 03.02.09 Fixed nucleic search - j was incrementing instead of decrementing!
• 07.07.14 Use bl prefix for functions By: CTP

Definition at line 223 of file throne.c.

char blThrone

(

char *

three

)

Parameters

[in]

*three

Three letter code

Returns

One letter code

Converts 3-letter code to 1-letter code. Handles ASX and GLX as X

• 29.09.92 Original By: ACRM
• 11.03.94 Modified to handle ASX and GLX in the tables
• 25.07.95 Added handling of gBioplibSeqNucleicAcid
• 07.07.14 Use bl prefix for functions By: CTP

Definition at line 153 of file throne.c.

char blThronex

(

char *

three

)

Parameters

[in]

*three

Three letter code

Returns

One letter code

Converts 3-letter code to 1-letter code. Handles ASX and GLX as B and Z.

• 29.09.92 Original By: ACRM
• 25.07.95 Added handling of gBioplibSeqNucleicAcid
• 07.07.14 Use bl prefix for functions By: CTP

Definition at line 188 of file throne.c.

Variable Documentation

BOOL gBioplibSeqNucleicAcid = FALSE

Definition at line 130 of file throne.c.