FindZonePDB.c File Reference

Routines for handling zones in PDB linked lists. More...

#include "SysDefs.h"
#include "MathType.h"
#include "pdb.h"
#include "macros.h"

Go to the source code of this file.

Functions
BOOL	blFindZonePDB (PDB *pdb, int start, char *startinsert, int stop, char *stopinsert, char *chain, int mode, PDB **pdb_start, PDB **pdb_stop)

Detailed Description

Routines for handling zones in PDB linked lists.

Version

V1.6

Date

07.05.14

Copyright

(c) UCL / Dr. Andrew C. R. Martin 1993-2014

Author

Dr. Andrew C. R. Martin

Institute of Structural & Molecular Biology, University College London, Gower Street, London. WC1E 6BT.

andre.nosp@m.w@bi.nosp@m.oinf..nosp@m.org..nosp@m.uk andre.nosp@m.w.ma.nosp@m.rtin@.nosp@m.ucl..nosp@m.ac.uk

This code is NOT IN THE PUBLIC DOMAIN, but it may be copied according to the conditions laid out in the accompanying file COPYING.DOC.

The code may be modified as required, but any modifications must be documented so that the person responsible can be identified.

The code may not be sold commercially or included as part of a commercial product except as described in the file COPYING.DOC.

Description:

Usage:

Revision History:

• V1.0 30.09.92 Original
• V1.1 16.06.93 Tidied for book. Mode now a char.
• V1.2 18.06.96 Added InPDBZone() from QTree program
• V1.3 19.09.96 Added InPDBZoneSpec()
• V1.5 20.03.14 Added blFindZonePDB() and deprecated InPDBZone() By: CTP
• V1.6 07.05.14 Moved FindZonePDB() to deprecated.h By: CTP

Definition in file FindZonePDB.c.

Function Documentation

BOOL blFindZonePDB	(	PDB *	pdb,
		int	start,
		char *	startinsert,
		int	stop,
		char *	stopinsert,
		char *	chain,
		int	mode,
		PDB **	pdb_start,
		PDB **	pdb_stop
	)

Parameters

[in]	*pdb	PDB linked list
[in]	start	Resnum of start of zone
[in]	*startinsert	Insert code for start of zone
[in]	stop	Resnum of end of zone
[in]	*stopinsert	Insert code for end of zone
[in]	*chain	Chain name
[in]	mode	ZONE_MODE_RESNUM: Use PDB residue numbers/chain ZONE_MODE_SEQUENTIAL: Use sequential numbering
[out]	**pdb_start	Start of zone
[out]	**pdb_stop	End of zone

Returns

OK?

Finds pointers to the start and end of a zone in a PDB linked list. The end is the atom after the specified zone

• 20.03.14 Function based on FindZonePDB() but takes string for chain label and insert instead of single char. Function finds end of chain properly if stop set to -999. By: CTP

Definition at line 105 of file FindZonePDB.c.