ReadSimplePIR.c File Reference

#include <ctype.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>

Go to the source code of this file.

Functions
int	blReadSimplePIR (FILE *fp, int maxres, char **seqs)

Detailed Description

Version

V2.9

Date

07.07.14

Copyright

(c) UCL / Dr. Andrew C. R. Martin 1991-2014

Author

Dr. Andrew C. R. Martin

Institute of Structural & Molecular Biology, University College London, Gower Street, London. WC1E 6BT.

andre.nosp@m.w@bi.nosp@m.oinf..nosp@m.org..nosp@m.uk andre.nosp@m.w.ma.nosp@m.rtin@.nosp@m.ucl..nosp@m.ac.uk

This code is NOT IN THE PUBLIC DOMAIN, but it may be copied according to the conditions laid out in the accompanying file COPYING.DOC.

The code may be modified as required, but any modifications must be documented so that the person responsible can be identified.

The code may not be sold commercially or included as part of a commercial product except as described in the file COPYING.DOC.

Description:

Usage:

int ReadSimplePIR(FILE *fp, int maxres, char **seqs)

This version (previously called ReadPIR()) is maintained only for compatibility with the old version. It will only read minimal specification PIR files.

Revision History:

• V1.0 01.06.92 Original
• V2.0 08.03.94 Changed name of ReadPIR() to ReadSimplePIR() Added new ReadPIR().
• V2.1 18.03.94 getc() -> fgetc()
• V2.2 11.05.94 Changes to ReadPIR() for better compatibility with PIR V38.0 and V39.0
• V2.3 28.02.95 Added ReadRawPIR()
• V2.4 13.03.95 Fixed bug in reading text lines in ReadRawPIR()
• V2.5 26.07.95 Removed unused variables
• V2.6 30.10.95 Cosmetic
• V2.7 06.02.96 Removes trailing spaces from comment line
• V2.8 18.06.02 Added string.h
• V2.9 07.07.14 Use bl prefix for functions By: CTP

Definition in file ReadSimplePIR.c.

Function Documentation

int blReadSimplePIR	(	FILE *	fp,
		int	maxres,
		char **	seqs
	)

Parameters

[in]	*fp	File pointer
[in]	maxres	Max number of residues in chain.
[out]	**seqs	Array of pointers to sequences

Returns

Number of chains. 0 if error

Read a PIR file containing multiple chains of up to maxres amino acids. Each chain is returned in seqs[]. The number of chains is returned by the routine. 0 is returned if a memory allocation failed

• 01.06.91 Original
• 03.03.94 Added check on case before toupper(). Changed name.
• 18.03.94 Changed getc() to fgetc()
• 07.07.14 Use bl prefix for functions By: CTP

Definition at line 121 of file ReadSimplePIR.c.