Quiz

Congratulations! You have now completed the practical

Using the answers that you recorded during the practical, now answer the following questions. This is only for your own benefit to ensure you have done all the stages correctly and understand what you are doing. These answers are not recorded.

1. In the log information from the first modelling experiment, how many putative templates were initially found?
6
20
27
30

2. In the first modelling experiment, how many of the putative templates were aligned to produce the Graphical Template Match Overview?
6
20
27
30

3. In the first modelling experiment, what was the 'ePDB' code of the template structure used?
1it2B
1it2A
1it3A
1it3D
1it3C
1it3B

4. In the first modelling experiment, what was the energy of the final model?
3.70 (SP3)
-3957.737 KJ/mol
-55.0
-8.00
-50.0
2.00

5. In the second modelling experiment, what was the energy of the final model?
3.70 (SP3)
-5116.782 KJ/mol
-13.4
2.00
-69.0
-2.00

6. On the basis of energy alone, which model is more likely to be correct?
The first model
The second model

7. What is the Cα RMSD between the first model and its parent?
0.558Â
0.930Â
3.109Â
3.764Â

8. What is the Cα RMSD between the second model and its parent?
0.558Â
0.930Â
3.109Â
3.764Â

9. On the basis of RMSD with the parent structure, which model do you think is more likely to be correct?
The first model
The second model

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Quiz

Congratulations! You have now completed the practical

I have completed this work to the best of my ability.