SWISS MODEL WORKSPACE
[ Workspace ] [ Modelling ] [ Tools ] [ Repository ] [ General Info ] [ Links ] [ Help ]
  [  login  ]




Workunit: P000001   Title:modalign1



Go to: [Template Selection] [Alignment] [Modelling Log] [Evaluation]

Print/Save this page as


Model Details: ? Segment 1

 
     Model info:
     modelled residue range: 1 to 144
display model: as pdb - as DeepView project
download model: as pdb - as Deepview project



Alignment   ? [top] 

TARGET    1       SLSDADKK ALDASWKKLT AGADGKKNAG INLVLWMFAN VPNMRAQFSK
1ux9A     18      elseaerk avqamwarly anse---dvg vailvrffvn fpsakqyfsq
                                                                      
TARGET               hhhhh hhhhhhhhhh         hh hhhhhhhhh    hhhh    
1ux9A                hhhhh hhhhhhhhhh    h   hhh hhhhhhhhh    h       


TARGET    49    FNANQSDDAL KGDAEFIKQV NVIVAALDGL LQSVNNPGQL QANLDKLAKS
1ux9A     63    fkhmedplem erspqlrkha srvmgalntv venlhdpdkv ssvlalvgka
                                                                      
TARGET                hhhh    hhhhhhh hhhhhhhhhh hh     hhh hhhhhhhhhh
1ux9A                 hhhh    hhhhhhh hhhhhhhhhh hh     hhh hhhhhhhhhh


TARGET    99    HVNLKIGLEF FGPLQQNIHS FIESALGVGA GSDEPKAWGN LIAAFN ---
1ux9A     113   ha-lkhkvep vyfkilsgvi levvaeefas dfppetqraw aklrgliysh
                                                                      
TARGET          h          hhhhhhhhhh hhhhhhh       hhhhhhh hhhhhh    
1ux9A           hh hh      hhhhhhhhhh hhhhhhh       hhhhhhh hhhhhhhhhh


TARGET          ----------                                            
1ux9A     162   vtaaykevgw                                            
                                                                      
TARGET                                                                
1ux9A           hhhhhhh



Anolea / Gromos / Verify3D   ? [top]
anolea: on  off       gromos: on  off       verify3d: on  off




Modelling log   ? [top]
3.70 (SP3)
Loading Template: 1ux9A.pdb
Loading Raw Sequence
Loading Alignment: ./user.align.submit.fasta.FF
Removing HET groups from template structure
Refining Raw Sequence Alignment
ProModII: doing simple assignment of backbone
ProModII: adding blocking groups
Adding Missing Sidechains
AddPolar H
BuildDeletetedLoopsModel
Building CSP loop with anchor residues ASP 22 and ASN 26
Building CSP loop with anchor residues ALA 21 and ASN 26
Number of Ligations found: 80
ACCEPTING loop   62: clash=   0 FF=        -13.4 PP=  2.00
Building CSP loop with anchor residues VAL 100 and LYS 103
Number of Ligations found: 5
ACCEPTING loop    4: clash=   0 FF=        -69.0 PP= -2.00
Optimizing Sidechains
Adding Hydrogens
Optimizing loops and OXT (nb = 9)
Final Total Energy:       -5116.782 KJ/mol
Dumping Sequence Alignment




If you publish results using SWISS-MODEL, please cite the following papers:
swissmodel.expasy.org/workspace [ SWISS-MODEL Team ]