Table of results for automatic protein check

Results for modeling_eg_1.pdb

List results for one check

Results for check BNDCHK by WHAT IF

Values by residue

The bond lengths in all protein residues were compared with standard bond angles taken from Engh and Huber [REF]. For DNA/RNA a comparison was made with values from Parkinson et al [REF]. The table below gives for each residue the highest absolute deviation (max|Z-score|) from the ideal values. This highest value could be for a cystein bridge or for the peptide bond to the previous residue.

Values are considered poor if they are larger than 3.00.

Values are considered bad if they are larger than 5.00.

residue BNDCHK
1-SER1.44
2-LEU0.62
3-SER0.95
4-ASP0.98
5-ALA0.97
6-ASP0.94
7-LYS0.97
8-LYS0.90
9-ALA0.97
10-LEU1.16
11-ASP0.98
12-ALA0.80
13-SER0.93
14-TRP3.62
15-LYS0.82
16-LYS1.05
17-LEU0.94
18-THR0.78
19-ALA0.95
20-GLY1.12
21-ALA0.90
22-ASP2.35
23-GLY2.63
24-LYS1.10
25-LYS3.35
26-ASN2.27
27-ALA0.84
28-GLY3.70
29-ILE1.98
30-ASN0.78
31-LEU0.93
32-VAL0.83
33-LEU1.61
34-TRP2.72
35-MET0.94
36-PHE2.64
37-ALA0.73
38-ASN3.08
39-VAL1.87
40-PRO1.71
41-ASN1.37
42-MET1.31
43-ARG1.00
44-ALA0.84
45-GLN3.38
46-PHE1.20
47-SER1.06
48-LYS0.83
49-PHE0.71
50-ASN1.29
51-ALA0.92
52-ASN1.48
53-GLN1.22
54-SER0.74
55-ASP1.00
56-ASP1.08
57-ALA0.95
58-LEU0.96
59-LYS0.84
60-GLY1.66
61-ASP0.69
62-ALA1.17
63-GLU0.98
64-PHE1.51
65-ILE1.33
66-LYS1.17
67-GLN0.72
68-VAL0.92
69-ASN0.78
70-VAL0.92
71-ILE1.21
72-VAL0.61
73-ALA0.87
74-ALA0.97
75-LEU0.82
76-ASP0.68
77-GLY1.55
78-LEU0.54
79-LEU1.00
80-GLN0.92
81-SER0.79
82-VAL1.14
83-ASN0.93
84-ASN1.94
85-PRO0.89
86-GLY1.73
87-GLN1.19
88-LEU0.66
89-GLN1.08
90-ALA0.84
91-ASN0.87
92-LEU0.72
93-ASP0.72
94-LYS1.12
95-LEU0.98
96-ALA0.91
97-LYS1.15
98-SER0.76
99-HIS2.74
100-VAL1.82
101-ASN0.93
102-LEU0.84
103-LYS0.96
104-ILE1.61
105-GLY1.94
106-LEU0.96
107-GLU2.26
108-PHE2.18
109-PHE1.29
110-GLY2.44
111-PRO2.58
112-LEU0.99
113-GLN1.22
114-GLN1.09
115-ASN1.01
116-ILE0.79
117-HIS2.56
118-SER0.86
119-PHE1.08
120-ILE1.17
121-GLU0.78
122-SER0.98
123-ALA0.68
124-LEU1.03
125-GLY1.75
126-VAL1.43
127-GLY1.70
128-ALA0.95
129-GLY3.57
130-SER2.93
131-ASP1.10
132-GLU1.37
133-PRO1.66
134-LYS0.99
135-ALA0.93
136-TRP3.48
137-GLY2.21
138-ASN0.82
139-LEU0.58
140-ILE0.82
141-ALA0.40
142-ALA0.72
143-PHE1.53
144-ASN1.01
Go to the options or the index of your results.
go to Biotech Collaboration home or Send feedback