Local Access to Key Bioinformatics Tools and Databases: The AMS BLAST and PSI-BLAST server


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Table of contents

Local Access to Key Bioinformatics Tools and Databases: The AMS BLAST and PSI-BLAST server

Why Local Access?

http://www.rubic.rdg.ac.uk/blast/

What do we need?

Obtaining the Raw Data

Accessing Raw Data

BLAST Databases

Automatic Creation

BLAST vs. PSI-BLAST

Masking

BLAST

PSI-BLAST

PSI-BLAST Profile

Non-redundatizing

The brain-dead method

Two-pass hashing

The Method

Store the data

Hash the sequences

Hash the sequencs

Drop Redundancies

Drop Redundancies

Some timings...

Help!

URLs

Author: Andrew C.R. Martin

E-mail: A.C.R.Martin@reading.ac.uk

Homepage: http://www.bioinf.org.uk/

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