Header Files

Bioplib - List of header files used by BiopLib

Header Files

Proteins and Sequences

Header files for data structures and prototypes for handling proteins and sequences.

• aalist.h - Include file for amino acid linked lists.
• access.h - Accessibility calculation code.
• angle.h - Include file for angle functions.
• array.h - Include file for 2D/3D array functions.
• hbond.h - Header file for hbond determining code.
• pdb.h - Include file for pdb routines.
• seq.h - Header file for sequence handling.

General Purpose

Useful general functions.

• fsscanf.h - Hard formatted version of sscanf(). Implements FORTRAN-like rigid column reading out of a string.
• general.h - Header file for general purpose routines.
• macros.h - Useful macros.
• help.h - Include file for interactive help functions.
• hpgl.h - Include file for hpgl.
• parse.h - Include file for the keyword command parser.
• plotting.h - Include file for using plotting routines.
• eigen.h - Include file for using Eigen value and vector functions.
• hash.h - Include file for hash/dictionary functions.
• regression.h - Include file for regression functions.

Support

Low level. Definitions and prototypes used by the files above.

• BuffInp.h - Read from a file a line at a time allowing looking ahead to the contents of the next line.
• ErrStack.h - Build and print an error stack for program failure.
• MathType.h - Type definitions for maths.
• MathUtil.h - Prototypes, etc. for maths utility routines.
• SysDefs.h - System-type variable type definitions.
• WindIO.h - Header for window/normal interface routines.
• cssr.h - Defines for CSSR handling.
• deprecated.h - Redirect calls to deprecated functions.
• fit.h - Include file for least squares fitting.
• matrix.h - Include file for matrix operations.
• port.h - Port-specific defines to allow us to use things like popen() in a clean compile.
• ps.h - Include file for PostScript routine.
• safemem.h - Safe malloc()/free() routines which check for array overflow on free.