Source code for Biop deprecated functions. More...

#include "deprecated.h"
#include "pdb.h"
#include "aalist.h"
#include "cssr.h"
#include "fit.h"
#include "hbond.h"
#include "seq.h"

Detailed Description

Source code for Biop deprecated functions.

Version: V1.11

Date: 24.08.15

Copyright: (c) UCL / Dr. Andrew C. R. Martin 2014-2015

Author: Dr. Andrew C. R. Martin

: Institute of Structural & Molecular Biology, University College London, Gower Street, London. WC1E 6BT.

: andre.nosp@m.w@bi.nosp@m.oinf..nosp@m.org..nosp@m.uk andre.nosp@m.w.ma.nosp@m.rtin@.nosp@m.ucl..nosp@m.ac.uk

This code is NOT IN THE PUBLIC DOMAIN, but it may be copied according to the conditions laid out in the accompanying file COPYING.DOC.

The code may be modified as required, but any modifications must be documented so that the person responsible can be identified.

The code may not be sold commercially or included as part of a commercial product except as described in the file COPYING.DOC.

Description:

Allows code utilising BiopLib to compile without modification to use function names with the 'bl' prefix.(The 'bl' prefix was introduced in July 2014.)

Allows use of deprecated functions that take a single character for the PDB chain identifier or insert value.

Usage:

Code using deprecated functions can be compiled without modification, however, all deprecated functions use the DEPRECATED macro which prints a warning message to stderr when a deprecated function is called.

The warning message can be suppressed as either an option at the compilation of the library or by setting an environment variable at runtime.

Documentation: Doxygen is not set to document deprecated functions. To document deprecated functions, add "deprecated" to the ENABLED SECTIONS tag in the Doxygen config file: bioplib/doc/doxygen/Doxyfile

Revision History:

V1.0 31.07.14 Original By: CTP
V1.1 08.08.14 Separated Biop and Gen deprecation By: ACRM
V1.2 14.08.14 Removed unnecessary includes. By: CTP
V1.3 19.08.14 Renamed functions: blBuildAtomNeighbourPDBList(), blExtractZonePDB(), blSelectAtomsPDB(), blStripHPDB(), blStripWatersPDB() with AsCopy suffix. By: CTP
V1.4 26.08.14 Added blSetMDMScoreWeight() By: ACRM
V1.5 24.10.14 Added blExtractZoneSpecPDBAsCopy()
V1.6 23.02.15 blWritePDBTrailier() and blRenumAtomsPDB() now take additional parameters
V1.7 24.02.15 WritePDB() points to blWritePDB() instead of blWriteAsPDB() (which is now blWritePDBAsPDBorGromos())
V1.8 02.03.15 blGetExptl() is now called blGetExptlPDB()
V1.9 05.03.15 Removed blFindEndPDB() as FindEndPDB() is deprecated and replaced by FindNextResidure()/blFindNextResidue()
V1.10 28.04.15 Updated doReadPDBML() for latest version of blDoReadPDBML(). By: CTP
V1.11 24.08.15 IsHBonded() wasn't deprecated properly

Definition in file deprecatedBiop.c.