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<h1>APAT: Documentation</h1>

<h2>Examples</h2>

<h3>Example of the XML format used for input to the APAT system</h3>

<pre>
&lt;input&gt;
   &lt;sequenceid&gt;
      sp|P17261|ERS1_YEAST Transmembrane protein ERS1 
      (ERD suppressor) - Saccharomyces cerevisiae (Baker's yeast).
   &lt;/sequenceid&gt;
   &lt;sequence&gt;
      MVSLDDILGIVYVTSWSISMYPPIITNWRHKSASAISMDFV
      MLNTAGYSYLVISIFLQLYCWKMTGDESDLGRPKLTQFDFW
      YCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLRIL
      LASLAIFSLLTVQFMYSNYWYDWHNSRTLAYCNNLFLLKIS
      MSLIKYIPQVTHNSTRKSMDCFPIQGVFLDVTGGIASLLQL
      IWQLSNDQGFSLDTFVTNFGKVGLSMVTLIFNFIFIMQWFV
      YRSRGHDLASEYPL
   &lt;/sequence&gt;
   &lt;emailaddress&gt;s.v.v.deevi@rdg.ac.uk&lt;/emailaddress&gt;
   &lt;parameter server='targetp' param='origin' value='non-plant' /&gt;
   &lt;parameter server='psort' param='origin' value='yeast' /&gt;
&lt;/input&gt;
</pre>

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